hii everyone i hav been doing a small work to find DE genes using network analysis..presently i have used cytoscape clusterone plugin and have got a cluster of almost 15 genes..what can i do further to get more specific genes and how? i would be glad if someone helped me out
What type of data are you using?
How many replicates do you have?
Edit: Maybe Im missing something here but to me differential expression analysis and network analysis are 2 seperate types of analysis. I would have thought that you would run differential analysis first and then a network analysis as a way of further analysing differentially expressed genes. So finding "DE genes using network analysis" makes no sense to me.
Please define what you mean by "more specific genes" properly.