Question: What's a KnownGene file?
gravatar for Bairon Hernández
3.5 years ago by
Bairon Hernández0 wrote:

Hello everybody,

i'm new in this website, i study bioinformatics in Chile. Well, my question is: what's a knownGene file and what's difference have with GFF/GTF file?. I know about the format file is difference, but i ask about the information that have each one.

Thanks so much for your time :D

sequence gene • 1.4k views
ADD COMMENTlink written 3.5 years ago by Bairon Hernández0

I guess you are referring to knownGene file from UCSC. It will have information about gene identifiers used by UCSC and their mapping on the genome. GFF/GTF file will have similar information using HGNC gene names (in case of human gene).

ADD REPLYlink written 3.5 years ago by genomax90k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1523 users visited in the last hour