Question: What's a KnownGene file?
0
gravatar for Bairon Hernández
2.6 years ago by
Chile
Bairon Hernández0 wrote:

Hello everybody,

i'm new in this website, i study bioinformatics in Chile. Well, my question is: what's a knownGene file and what's difference have with GFF/GTF file?. I know about the format file is difference, but i ask about the information that have each one.

Thanks so much for your time :D

sequence gene • 1.1k views
ADD COMMENTlink written 2.6 years ago by Bairon Hernández0
1

I guess you are referring to knownGene file from UCSC. It will have information about gene identifiers used by UCSC and their mapping on the genome. GFF/GTF file will have similar information using HGNC gene names (in case of human gene).

ADD REPLYlink written 2.6 years ago by genomax74k
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