Entering edit mode
7.1 years ago
Rishikesh Lotke
•
0
Hi everyone,
I recently downloaded the histone modifications BAM and broadPeak files for GM12878 cells from UCSC (ENCODE histone modifications > Broad histone) from the link provided below:
http://genome-euro.ucsc.edu/cgi-bin/hgFileUi?db=hg19&g=wgEncodeBroadHistone
However, the 'Additional Details' column for some of the files states the origAssembly=hg18 while it is hg19 for the others but the 'Alignment' sub-section in the 'Methods' section at the bottom of the page says GRCh37/hg19.
So my question is which human genome assembly (hg18 or hg19) was used for generating these files?
