Question: UCSC ENCODE Broad histone modifications genome version
0
gravatar for Rishikesh Lotke
3.4 years ago by
Institut für Virologie, Medizinische Hochschule Hannover, Germany
Rishikesh Lotke0 wrote:

Hi everyone,

I recently downloaded the histone modifications BAM and broadPeak files for GM12878 cells from UCSC (ENCODE histone modifications > Broad histone) from the link provided below:

http://genome-euro.ucsc.edu/cgi-bin/hgFileUi?db=hg19&g=wgEncodeBroadHistone

However, the 'Additional Details' column for some of the files states the origAssembly=hg18 while it is hg19 for the others but the 'Alignment' sub-section in the 'Methods' section at the bottom of the page says GRCh37/hg19.

So my question is which human genome assembly (hg18 or hg19) was used for generating these files?

ADD COMMENTlink written 3.4 years ago by Rishikesh Lotke0
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