Question: How to plot mutation hotspot according to mutation counts
0
gravatar for wangshx
3.1 years ago by
wangshx10
China/Shanghai/ShanghaiTech. University
wangshx10 wrote:

There is a data.frame including the number of mutation & start position and end position of mutation interval, just like

> head(chr1)
   start   end mutation_count
1: 10493 10512              0
2: 10556 10562              0
3: 10596 10603              0
4: 10633 10657              0
5: 10662 10686              2
6: 10691 10715              1

How can I plot a hotspot figure, which lateral axis stands for mutation position, and y axis means number of mutation?

hotspot plot R genome • 1.1k views
ADD COMMENTlink modified 3.1 years ago by Chris Miller21k • written 3.1 years ago by wangshx10
2
gravatar for Chris Miller
3.1 years ago by
Chris Miller21k
Washington University in St. Louis, MO
Chris Miller21k wrote:

There are several R packages and online tools, but I'd probably start with http://www.cbioportal.org/mutation_mapper.jsp

ADD COMMENTlink written 3.1 years ago by Chris Miller21k

Thanks a lot. I will try. :)

ADD REPLYlink written 3.1 years ago by wangshx10
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