Question: How to plot mutation hotspot according to mutation counts
0
gravatar for wangshx
3 months ago by
wangshx0
China/Shanghai/ShanghaiTech. University
wangshx0 wrote:

There is a data.frame including the number of mutation & start position and end position of mutation interval, just like

> head(chr1)
   start   end mutation_count
1: 10493 10512              0
2: 10556 10562              0
3: 10596 10603              0
4: 10633 10657              0
5: 10662 10686              2
6: 10691 10715              1

How can I plot a hotspot figure, which lateral axis stands for mutation position, and y axis means number of mutation?

hotspot plot R genome • 182 views
ADD COMMENTlink modified 3 months ago by Chris Miller18k • written 3 months ago by wangshx0
2
gravatar for Chris Miller
3 months ago by
Chris Miller18k
Washington University in St. Louis, MO
Chris Miller18k wrote:

There are several R packages and online tools, but I'd probably start with http://www.cbioportal.org/mutation_mapper.jsp

ADD COMMENTlink written 3 months ago by Chris Miller18k

Thanks a lot. I will try. :)

ADD REPLYlink written 3 months ago by wangshx0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 464 users visited in the last hour