Question: How to get HGVS notation of protein form genome snp vcf
0
gravatar for yixinrufeng
18 months ago by
yixinrufeng0 wrote:

Hi everyone

I want to do variation annotation with PROVEAN (http://provean.jcvi.org/seq_submit.php) on non-module organisms, I have got protein sequence of my study species from MAKER, also got snp VCF file from GATK, but I can not get HGVS notation of protein sequence of my study organisms. Could you please tell me which tools could do this stuff? Thank you very much.

genome • 441 views
ADD COMMENTlink written 18 months ago by yixinrufeng0

Hi, What do you mean ? Do you want HGVS annotation of protein but for an other organism than Human ?

ADD REPLYlink written 18 months ago by Titus740

Yes, you are right, not for Human.

ADD REPLYlink written 18 months ago by yixinrufeng0
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