tajima D, nucleotide diversity and haplotype diversity
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7.0 years ago
wanjahi.njau ▴ 10

how do you compute tajima D, nucleotide diversity and haplotype diversity using VCF tools if you have data of 8 populations of 1 individual each

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Unfortunately I think your sample size isn't big enough to make those analysis. One individual per population isn't enough to have meaningful information on your populations.

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