Using the repair utility in FeatureCounts

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7.0 years ago

oma219 ▴ 40

Does anyone know how the use the repair utility program that's a part of featureCounts? I have been running featureCounts from command line so I tried running "repair" from command line but it can't find the program. I downloaded the subread package so I'm not sure why I cannot find it, Is there a special way to run it? Thanks.

software error sequencing • 1.1k views

ADD COMMENT • link 7.0 years ago by oma219 ▴ 40

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Where did you install it?

ADD REPLY • link 7.0 years ago by Devon Ryan 104k

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On my computer, in the software folder

ADD REPLY • link 7.0 years ago by oma219 ▴ 40

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repair may be in the utilities folder inside bin. Since the folder is probably not in your $PATH it is not working?

ADD REPLY • link 7.0 years ago by GenoMax 142k

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Awesome, I found it thanks!

ADD REPLY • link 7.0 years ago by oma219 ▴ 40

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