how to get a list of genes affected by a transcription factor?

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8.5 years ago

galkimhi123 ▴ 10

i'm working on a gene that codes for a transcription factor and I want to know all the genes that are either associated with that gene or are affected by the transcription factor directly. which database should i go to?

transcription factor genes • 2.6k views

ADD COMMENT • link updated 8.5 years ago by Emily 24k • written 8.5 years ago by galkimhi123 ▴ 10

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If you mean interaction with 'associated', you can try the string db. You can look in GEO for ChIP-seq experiments with your TF, or design a experiment yourself if it's not done yet!

ADD REPLY • link 8.5 years ago by Benn 8.4k

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In which species are your working?

ADD REPLY • link 8.5 years ago by Biojl ★ 1.7k

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Working with Human...

ADD REPLY • link 8.5 years ago by galkimhi123 ▴ 10

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Check ENCODE: https://www.encodeproject.org/

ADD REPLY • link 8.5 years ago by Biojl ★ 1.7k

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thanks for the info!

ADD REPLY • link 8.5 years ago by galkimhi123 ▴ 10

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