Question: how to analyse chip-chip on normalized data without bpmap file or how to select bpmap file for your data(data downloaded from NCBI geo)
gravatar for Sudhir Jadhao
2.4 years ago by
Sudhir Jadhao60 wrote:

Hello Everyone,

I want to analyse chip-chip data. I have downloaded CEL file and normalized data file from NCBI geo.

  1. To call peak using CEL file, I will need bpmap file. I have downloaded bpmap file from different sources.All have extension like M01R, M02R, .. ,M14R. But for my data I will need to select one for my CEL file. Can anyone please suggest me how to select single bpmap file (from above extension file) for my CEL file.

  2. I can also call peak on normalized file downloaded from NCBI GEO. Again I don't know how to select bpmap file. Is there any way to do without bpmap file

Thank you In advance.

chip-chip • 553 views
ADD COMMENTlink written 2.4 years ago by Sudhir Jadhao60
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1971 users visited in the last hour