Question: converting wannovar generated csv annotation data to a vcf=4.1 file.
gravatar for sktbanerjee1
2.4 years ago by
sktbanerjee130 wrote:

hello everyone. so, I have called somatic variants using GATK Mutect2 for tumor normal samples, and then annotated them with the web version of annnovar available, and after the annotation procedure I got a .csv file. now I want to convert that .csv file into a conventional vcf file for variant prioritization. I tried converting the file using Microsoft excel. but the resulting tab delimited file is not recognized as a valid input for the prioritization tools. can any one help?

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