Question: converting wannovar generated csv annotation data to a vcf=4.1 file.
0
gravatar for sktbanerjee1
2.4 years ago by
sktbanerjee130
sktbanerjee130 wrote:

hello everyone. so, I have called somatic variants using GATK Mutect2 for tumor normal samples, and then annotated them with the web version of annnovar available, and after the annotation procedure I got a .csv file. now I want to convert that .csv file into a conventional vcf file for variant prioritization. I tried converting the file using Microsoft excel. but the resulting tab delimited file is not recognized as a valid input for the prioritization tools. can any one help?

ADD COMMENTlink written 2.4 years ago by sktbanerjee130
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 789 users visited in the last hour