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• What tools are proper for plant genome pre- and post-assembly and annotation of the de novo results?
  What tools are proper for plant genome pre- and post-assembly and annotation of the de novo resul...
• What desktop GUI software is proper for a plant transcriptome de novo assembly and result annotation?
  What desktop GUI software is proper for a plant transcriptome de novo assembly and result annotat...
• structural variants in de novo genome assemblies
  What are some tools that can compare **2 or more plant genomes** that are ***de novo*** assembled...
• Is there any alternative to QUAST software to evaluate de novo assembly results?
  Is there any alternative to QUAST software to evaluate de novo assembly results? I need to check...
• RNAseq Assembly in Diversity Panels
  I am currently trying to find out what options are available for assembly of RNAseq reads of many...
• K-mer size and de-novo assembly and SNP mining
  I have Illumina whole genome paired end short sequence reads of length 150 bp. I want to design k...
• SNP annotation for de novo transcriptome data
  I have list of SNP for de novo transcriptome data (plant) . I would like to know the tools to ann...
• What should be the minimum 454 read (single-end) length for de novo assembly run
  Hi, I have 454 (single-end) data with 20x coverage for a plant genome with 1.2 Gb size. Can anyon...
• SNP calling in non-model organism
  hi I want to calling SNP in my RNAseq Data in my plant sample. my plant don't have reference geno...
• Choosing de novo genome assembly
  Hi, I have Ren-seq Data of plant (tomato) from PacBio ( ~420 Mb in fasta) to assemble. The assem...
• Are there any analogs of the RAST and Prokka software for the plant transcriptome and genome annotation?
  Are there any analogs of the RAST and Prokka software for the plant transcriptome and genome anno...
• assembly of large Genome(tool)
  hello, I wanted to know what is the most appropriate tool assembler for data from a large "large ...
• coding potential tool for de novo assembled transcripts for plant species
  Is there any other tool than CPC for calculation of coding potential for de novo assembled transc...
• Seeking help with transcriptome assembly
  Hello Biostar members, I am new to the field of NGS data analysis and would like to get some adv...
• What is the best de novo assembler for bacteria?
  Hello, biostars! I am working on a project on metagenomics. The first step is to assemble 100 bp...
• Aligning de-novo assembly to reference strain genome
  Dear Biostars Community - I generated a de-novo assembly of my viral strain. I wanted to analyze...
• What are the methods and recources of filtering contigs after de novo genome assembly ?
  Hello, I have a plant chloroplast genome that I de novo assembled using velvet. Now I want to f...
• Validation Of De Novo Rna-Seq Assembly
  Hi, I recently performed the de novo assembly of plant RNA-seq data using Velvet/Oases with the ...
• help to do genome assembly
  I prepare genomic shotgun libraries for sequencing using Single Molecule Real Time (SMRT) sequenc...
• De Novo assembly?
  I want to ask about the meaning of paired-end data and mate- pair data in De Novo assembly of pai...
• How much data and how many libraries do we need for de-novo assembly?
  Hi Could you please explain how many libraries (with different insert-sizes) and how much data ...
• Tools For De Novo Transcriptome Assembly Of Ion Torrent Reads?
  I've seen on Ion Torrent's developers site that people is using MIRA as a de novo assembler of Io...
• De novo plant genome assembly
  Hello clever community! I need your advice. I am working on a *de novo* plant genome assembly of...
• What is a "draft genome assembly"?
  Hi, Can someone explain what is draft genome assembly? does it mean it assembled in de novo method?