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• What tools are proper for plant genome pre- and post-assembly and annotation of the de novo results?
  What tools are proper for plant genome pre- and post-assembly and annotation of the de novo resul...
• What desktop GUI software is proper for a plant transcriptome de novo assembly and result annotation?
  What desktop GUI software is proper for a plant transcriptome de novo assembly and result annotat...
• structural variants in de novo genome assemblies
  What are some tools that can compare **2 or more plant genomes** that are ***de novo*** assembled...
• Is there any alternative to QUAST software to evaluate de novo assembly results?
  Is there any alternative to QUAST software to evaluate de novo assembly results? I need to check...
• RNAseq Assembly in Diversity Panels
  I am currently trying to find out what options are available for assembly of RNAseq reads of many...
• K-mer size and de-novo assembly and SNP mining
  I have Illumina whole genome paired end short sequence reads of length 150 bp. I want to design k...
• SNP annotation for de novo transcriptome data
  I have list of SNP for de novo transcriptome data (plant) . I would like to know the tools to ann...
• What should be the minimum 454 read (single-end) length for de novo assembly run
  Hi, I have 454 (single-end) data with 20x coverage for a plant genome with 1.2 Gb size. Can anyon...
• SNP calling in non-model organism
  hi I want to calling SNP in my RNAseq Data in my plant sample. my plant don't have reference geno...
• Choosing de novo genome assembly
  Hi, I have Ren-seq Data of plant (tomato) from PacBio ( ~420 Mb in fasta) to assemble. The assem...
• Are there any analogs of the RAST and Prokka software for the plant transcriptome and genome annotation?
  Are there any analogs of the RAST and Prokka software for the plant transcriptome and genome anno...
• assembly of large Genome(tool)
  hello, I wanted to know what is the most appropriate tool assembler for data from a large "large ...
• coding potential tool for de novo assembled transcripts for plant species
  Is there any other tool than CPC for calculation of coding potential for de novo assembled transc...
• What is the best de novo assembler for bacteria?
  Hello, biostars! I am working on a project on metagenomics. The first step is to assemble 100 bp...
• Seeking help with transcriptome assembly
  Hello Biostar members, I am new to the field of NGS data analysis and would like to get some adv...
• Aligning de-novo assembly to reference strain genome
  Dear Biostars Community - I generated a de-novo assembly of my viral strain. I wanted to analyze...
• Mapping soft for de novo assembly
  I am now de novo sequence analysis and now finished de novo assemble and got multi fasta file. I...
• Validation Of De Novo Rna-Seq Assembly
  Hi, I recently performed the de novo assembly of plant RNA-seq data using Velvet/Oases with the ...
• What are the methods and recources of filtering contigs after de novo genome assembly ?
  Hello, I have a plant chloroplast genome that I de novo assembled using velvet. Now I want to f...
• help to do genome assembly
  I prepare genomic shotgun libraries for sequencing using Single Molecule Real Time (SMRT) sequenc...
• De Novo assembly?
  I want to ask about the meaning of paired-end data and mate- pair data in De Novo assembly of pai...
• Sequence duplication levels in de-novo assemblies
  Hi all! Is such a result ( https://imgur.com/DGxsFN7 ) concerning if the overall goal is to do de...
• How much data and how many libraries do we need for de-novo assembly?
  Hi Could you please explain how many libraries (with different insert-sizes) and how much data ...