Off topic:Problems installing devtools in R
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8.1 years ago
sgmiriuka ▴ 10

Hi there,

I am having many troubles installing devtools in R (Ubuntu 16-04). No problems in OSX, but not sure why I can't get anywhere in Ubuntu. These is the error log. No idea why I get so many error when trying to install dependencies, which in fact I installed. I understand that it can't find them, but no idea why

Yes, I am a begginer in all these... Thanks in advance!!


* installing *source* package ‘mime’ ...
** package ‘mime’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c rawmatch.c -o rawmatch.o

gcc: error: unrecognized command line option ‘-fstack-protector-strong’
gcc: error: unrecognized command line option ‘-Wdate-time’

/usr/lib/R/etc/Makeconf:159: recipe for target 'rawmatch.o' failed
make: *** [rawmatch.o] Error 1

ERROR: compilation failed for package ‘mime’

* removing ‘/home/sgmiriuka/R/x86_64-pc-linux-gnu-library/3.4/mime’

Warning in install.packages :
  installation of package ‘mime’ had non-zero exit status

* installing *source* package ‘curl’ ...
** package ‘curl’ successfully unpacked and MD5 sums checked

Found pkg-config cflags and libs!
Using PKG_CFLAGS=
Using PKG_LIBS=-lcurl

------------------------- ANTICONF ERROR ---------------------------

Configuration failed because libcurl was not found. Try installing:
 * deb: libcurl4-openssl-dev (Debian, Ubuntu, etc)
 * rpm: libcurl-devel (Fedora, CentOS, RHEL)
 * csw: libcurl_dev (Solaris)

If libcurl is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a libcurl.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'

--------------------------------------------------------------------

ERROR: configuration failed for package ‘curl’
* removing ‘/home/sgmiriuka/R/x86_64-pc-linux-gnu-library/3.4/curl’

Warning in install.packages :
  installation of package ‘curl’ had non-zero exit status

* installing *source* package ‘openssl’ ...
** package ‘openssl’ successfully unpacked and MD5 sums checked
Found pkg-config cflags and libs!
Using PKG_CFLAGS=
Using PKG_LIBS=-lssl -lcrypto

------------------------- ANTICONF ERROR ---------------------------

Configuration failed because openssl was not found. Try installing:
 * deb: libssl-dev (Debian, Ubuntu, etc)
 * rpm: openssl-devel (Fedora, CentOS, RHEL)
 * csw: libssl_dev (Solaris)
 * brew: openssl@1.1 (Mac OSX)

If openssl is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a openssl.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'

--------------------------------------------------------------------

ERROR: configuration failed for package ‘openssl’

* removing ‘/home/sgmiriuka/R/x86_64-pc-linux-gnu-library/3.4/openssl’
Warning in install.packages :
  installation of package ‘openssl’ had non-zero exit status

* installing *source* package ‘digest’ ...

** package ‘digest’ successfully unpacked and MD5 sums checked

** libs

gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c aes.c -o aes.o

gcc: error: unrecognized command line option ‘-fstack-protector-strong’
gcc: error: unrecognized command line option ‘-Wdate-time’

/usr/lib/R/etc/Makeconf:159: recipe for target 'aes.o' failed
make: *** [aes.o] Error 1

ERROR: compilation failed for package ‘digest’

* removing ‘/home/sgmiriuka/R/x86_64-pc-linux-gnu-library/3.4/digest’

Warning in install.packages :

  installation of package ‘digest’ had non-zero exit status

* installing *source* package ‘jsonlite’ ...
** package ‘jsonlite’ successfully unpacked and MD5 sums checked
** libs

gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api     -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c base64.c -o base64.o

gcc: error: unrecognized command line option ‘-fstack-protector-strong’

gcc: error: unrecognized command line option ‘-Wdate-time’

/usr/lib/R/etc/Makeconf:159: recipe for target 'base64.o' failed
make: *** [base64.o] Error 1

ERROR: compilation failed for package ‘jsonlite’
* removing ‘/home/sgmiriuka/R/x86_64-pc-linux-gnu-library/3.4/jsonlite’
Warning in install.packages :

  installation of package ‘jsonlite’ had non-zero exit status
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