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6.9 years ago
jihwan8611
•
0
Hello, I'm trying to generate new reference annatoation file(GTF) of sub-population (or ecotype). Currently, I have reference genome annotation file(GTF) and vcf file from the sub-population. but I am now afraid using current reference genome annotation file(GTF) becuse indels would ruine the orignal coordinates of GTF.
So Is there any tools for shift orginal GTF coordinate base on VCF ?
Thank you very much!
I have the same problem:) Did you find a solution?