Question: What do the blast parameters template_type, template_length, best_hit_overhang, and best_hit_score_edge do
0
gravatar for Jacob
22 months ago by
Jacob10
Jacob10 wrote:

For template_type and template_length, this is all I can really find on them

 -template_type <String, `coding', `coding_and_optimal', `optimal'>
   Discontiguous MegaBLAST template type
 -template_length <Integer, Permissible values: '16' '18' '21' >
   Discontiguous MegaBLAST template length

I don't really know what they are though and I don't know what differences setting optimal or coding will do. I also don't know the benefit of selecting 16 18 or 21 as length

This is all I can find on the best hit options

-best_hit_overhang <Real, (>0 and <0.5)>
   Best Hit algorithm overhang value (recommended value: 0.1)
 -best_hit_score_edge <Real, (>0 and <0.5)>
   Best Hit algorithm score edge value (recommended value: 0.1)
ADD COMMENTlink written 22 months ago by Jacob10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 792 users visited in the last hour