Question

samtools sorting to index a BAM file

2

Entering edit mode

6.9 years ago

db3000 ▴ 20

Can I index a BAM file that is sorted by queryname instead of coordinates using samtools?

bam samtools • 2.1k views

ADD COMMENT • link updated 6.9 years ago by Pierre Lindenbaum 161k • written 6.9 years ago by db3000 ▴ 20

score 3 · Accepted Answer · 2017-06-15

3

Entering edit mode

6.9 years ago

Pierre Lindenbaum 161k

no, indexing is only for coordinate

ADD COMMENT • link 6.9 years ago by Pierre Lindenbaum 161k