Question: Beagle Error Code_Unable to access jarfile
0
gravatar for yichen503
3.7 years ago by
yichen50310
yichen50310 wrote:

Hi I have downloaded BEAGLE 4.1 because I want to perform imputation for my SNP data. For some reason I have been getting the same error message every single time.

My lines:

C:\Users\andy5_000>java -jar beagle.08Jun17.d8b.jar gt=SNP_437.vcf impute=TRUE out=Phased_SNP_437.vcf

**Error: Unable to access jarfile beagle.08Jun17.d8b.jar**

The file name is correct and I have updated to the newest BEAGLE version, so I do not understand why it still doesn't run.

jarfile error snp beagle sequencing • 1.8k views
ADD COMMENTlink modified 3.7 years ago by GenoMax96k • written 3.7 years ago by yichen50310
2

File name may be correct but if the jar file is not in andy5_000 directory it will not be found (looks like you are using windows?). Try providing full path to the jar file (if it is in a different directory) as a start.

ADD REPLYlink modified 3.7 years ago • written 3.7 years ago by GenoMax96k

Thank you! I made an amateur mistake of not placing it in the right folder.

ADD REPLYlink written 3.7 years ago by yichen50310

Hi, how did you download Beagle 4.1 , because i have to download it but i don't know how exactly ! can i have some help please ?!

ADD REPLYlink written 2.8 years ago by nour.hadjz20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1936 users visited in the last hour
_