Question: peak annotation chip-seq
0
gravatar for ana222
2.9 years ago by
ana2220
ana2220 wrote:

Hello all. I used the Sample file PeakAnalyzer (PeakAnnotator.peaks file) (http://www.ebi.ac.uk/sites/ebi.ac.uk/files/groups/bertone/software/PeakAnalyzer_sample_data.tar.gz)

And I downloaded human annotation from the site of Ensembl.

(ftp://ftp.ensembl.org/pub/grch37/release-89/gtf/homo_sapiens/Homo_sapiens.GRCh37.87.gtf.gz)

. Now running the program PeakAnalyzer. When I give the annotation file to software, and run the program. it has error

"java.lang.ArratIndexOutOfBoundsException:8"

While the annotation Homo_sapiens.GRCh37.74.gtf.gz (ftp://ftp.ensembl.org/pub/release-74/gtf/homo_sapiens/Homo_sapiens.GRCh37.74.gtf.gz) responds and does not give Error. Is the annotation Homo_sapiens.GRCh37.87.gtf.gz problem?

Please guide me...

Thanks a lot

ADD COMMENTlink modified 2.9 years ago by RamRS27k • written 2.9 years ago by ana2220
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