I try to find tools to detect AS events like the 5' / 3' extension of a boundary of an exon.
I finde some tools like DSGseq, DEXSeq or Cuffdif,rDiff. And the authors say that you can detect with these tools AS-events.
But I tested that and it seems like DSGseq DEXSeq check only if a exon expressed or not . And Cuffdiff check the different isoforms of samples.
Do I have missunderstand AS-events. ?? Why they say that these tools detect AS-event but it cant.. or do compare expression of different isoforms.
Which tool can idendefind the 5' / 3' extension of a boundary of an exon.
And means differential AS detection methods , a tool to detect AS events or different spliced transcript isoforms ?