Question: coding potential tool for de novo assembled transcripts for plant species
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gravatar for Bioinfonext
2.6 years ago by
Bioinfonext200
Korea
Bioinfonext200 wrote:

Is there any other tool than CPC for calculation of coding potential for de novo assembled transcripts for plant species whose genome sequences is not available.

Thanks Yogesh

rna-seq • 667 views
ADD COMMENTlink modified 2.6 years ago by vmicrobio240 • written 2.6 years ago by Bioinfonext200
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gravatar for vmicrobio
2.6 years ago by
vmicrobio240
vmicrobio240 wrote:

Hi nabiyogesh,

I would recommend COME (code source and paper).

I also heard about PLEK (code source and paper) and CPAT but never used it

ADD COMMENTlink written 2.6 years ago by vmicrobio240
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