Question: Fungal Metagenome Query
0
gravatar for subodh
2.2 years ago by
subodh0
Bionivid Technology Pvt. Ltd, Bengaluru
subodh0 wrote:

Hello all..

I am using UNITE database for soil fungal metagenome analysis and I have few queries.

  1. What is the Species Hypotheses (SH) threshold (0.5 to 3.0%) used in UNITE and if we have to change the threshold how can we change it ?
  2. Is there any change in annotation if we change the threshold ?
  3. On what basis the default (1.5%) is defined ?
  4. What is the optimal threshold that can be used to analyse the fungal metagenome data ?

Thanks in advance.

sequence • 671 views
ADD COMMENTlink modified 2.2 years ago • written 2.2 years ago by subodh0

Hello subodh!

It appears that your post has been cross-posted to another site: http://seqanswers.com/forums/showthread.php?p=208981

This is typically not recommended as it runs the risk of annoying people in both communities.

ADD REPLYlink written 2.2 years ago by WouterDeCoster40k

Sorry for that.

Actually I am badly stuck with the problem so posted in both communities to get the solution faster from the experienced persons.

Anyways, thanks for the information.

ADD REPLYlink written 2.2 years ago by subodh0
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