customize reference genome
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7.0 years ago
bitpir ▴ 240

How do you customize a reference genome, say, hg19, and make into a personalized reference genome in fasta format? I don't have the phased sequence information, but I have the fastq's, bam, and vcf formats.

DNA-seq • 1.7k views
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7.0 years ago

Sounds like a job for GATK FastaAlternateReferenceMaker

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Perfect, just what I need. Thanks!

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Glad to help. If my answer resolved your question you should accept it to mark this question as solved. Upvote|Bookmark|Accept

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