Entering edit mode
7.2 years ago
mms140130
▴
60
Hello I have the following data about copy number variation for breast cancer (BRCA) and I want to do gene annotation according to the start , end locations, I downloaded the data from firebrowse
here is part of the data
Sample Chromosome Start End Num_Probes Segment_Mean
TCGA-3C-AAAU-10A-01D-A41E-01 1 3218610 95674710 53225 0.0055
TCGA-3C-AAAU-10A-01D-A41E-01 1 95676511 95676518 2 -1.6636
TCGA-3C-AAAU-10A-01D-A41E-01 1 95680124 167057183 24886 0.0053
TCGA-3C-AAAU-10A-01D-A41E-01 1 167057495 167059336 3 -1.0999
TCGA-3C-AAAU-10A-01D-A41E-01 1 167059760 181602002 9213 -8.00E-04
TCGA-3C-AAAU-10A-01D-A41E-01 1 181603120 181609567 6 -1.2009
TCGA-3C-AAAU-10A-01D-A41E-01 1 181610685 201473647 12002 0.0055
TCGA-3C-AAAU-10A-01D-A41E-01 1 201474400 201474544 2 -1.4235
TCGA-3C-AAAU-10A-01D-A41E-01 1 201475220 247813706 29781 -4.00E-04
TCGA-3C-AAAU-10A-01D-A41E-01 2 484222 51515129 30300 0.0044
TCGA-3C-AAAU-10A-01D-A41E-01 2 51517041 51524666 11 -1.1753