I have 9 bigwig files for which i computeMatrix over a single bed file (deeptools). Say they are replicates of the same experiment (3 replicates of condition1,2 and3). I can then draw a profile plot for all these 9 bw files over this bedfile with plotprofile --pergroup.
Is there a way to draw a plot with the same bed file but taking the mean of all 9 bw files? (i.e. to draw a single line representing all 9 bw files) Or say, taking the mean in groups of 3? ( condition1,2 and3)
without having to make a merged bigwig...