Question: Map from GEO samples' name to TCGA name
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gravatar for landscape95
19 months ago by
landscape95160
landscape95160 wrote:

I am working on several GEO data sets, the samples are GSMxxx, can these samples be converted to TCGA format type TCGA-xx-xx. For example, data sets "GSE10810", "GSE10780", "GSE12276", "GSE19615", "GSE20711", "GSE21653", "GSE9195" on NCBI. Your help is really appreciated. Thank you!

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10810

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10780

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12276

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19615

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20711

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE21653

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE9195

mapping • 497 views
ADD COMMENTlink modified 19 months ago by Samuel Brady280 • written 19 months ago by landscape95160
0
gravatar for Samuel Brady
19 months ago by
Samuel Brady280
Samuel Brady280 wrote:

Those GEO accessions are not necessarily TCGA samples and so may not have TCGA IDs.

ADD COMMENTlink written 19 months ago by Samuel Brady280
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