Question: Map from GEO samples' name to TCGA name
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gravatar for landscape95
17 months ago by
landscape95140
landscape95140 wrote:

I am working on several GEO data sets, the samples are GSMxxx, can these samples be converted to TCGA format type TCGA-xx-xx. For example, data sets "GSE10810", "GSE10780", "GSE12276", "GSE19615", "GSE20711", "GSE21653", "GSE9195" on NCBI. Your help is really appreciated. Thank you!

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10810

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10780

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12276

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19615

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20711

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE21653

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE9195

mapping • 458 views
ADD COMMENTlink modified 17 months ago by Samuel Brady250 • written 17 months ago by landscape95140
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gravatar for Samuel Brady
17 months ago by
Samuel Brady250
Samuel Brady250 wrote:

Those GEO accessions are not necessarily TCGA samples and so may not have TCGA IDs.

ADD COMMENTlink written 17 months ago by Samuel Brady250
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