Question: Map from GEO samples' name to TCGA name
0
gravatar for landscape95
2.3 years ago by
landscape95160
landscape95160 wrote:

I am working on several GEO data sets, the samples are GSMxxx, can these samples be converted to TCGA format type TCGA-xx-xx. For example, data sets "GSE10810", "GSE10780", "GSE12276", "GSE19615", "GSE20711", "GSE21653", "GSE9195" on NCBI. Your help is really appreciated. Thank you!

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10810

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10780

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12276

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19615

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20711

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE21653

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE9195

mapping • 675 views
ADD COMMENTlink modified 2.3 years ago by Samuel Brady300 • written 2.3 years ago by landscape95160
0
gravatar for Samuel Brady
2.3 years ago by
Samuel Brady300
Samuel Brady300 wrote:

Those GEO accessions are not necessarily TCGA samples and so may not have TCGA IDs.

ADD COMMENTlink written 2.3 years ago by Samuel Brady300
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1856 users visited in the last hour