Question: Map from GEO samples' name to TCGA name
0
gravatar for landscape95
15 months ago by
landscape95140
landscape95140 wrote:

I am working on several GEO data sets, the samples are GSMxxx, can these samples be converted to TCGA format type TCGA-xx-xx. For example, data sets "GSE10810", "GSE10780", "GSE12276", "GSE19615", "GSE20711", "GSE21653", "GSE9195" on NCBI. Your help is really appreciated. Thank you!

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10810

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10780

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12276

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19615

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20711

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE21653

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE9195

mapping • 425 views
ADD COMMENTlink modified 15 months ago by Samuel Brady240 • written 15 months ago by landscape95140
0
gravatar for Samuel Brady
15 months ago by
Samuel Brady240
Samuel Brady240 wrote:

Those GEO accessions are not necessarily TCGA samples and so may not have TCGA IDs.

ADD COMMENTlink written 15 months ago by Samuel Brady240
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2220 users visited in the last hour