Question: Map from GEO samples' name to TCGA name
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gravatar for landscape95
3.3 years ago by
landscape95170
landscape95170 wrote:

I am working on several GEO data sets, the samples are GSMxxx, can these samples be converted to TCGA format type TCGA-xx-xx. For example, data sets "GSE10810", "GSE10780", "GSE12276", "GSE19615", "GSE20711", "GSE21653", "GSE9195" on NCBI. Your help is really appreciated. Thank you!

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10810

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10780

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12276

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19615

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20711

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE21653

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE9195

mapping • 865 views
ADD COMMENTlink modified 3.3 years ago by Samuel Brady320 • written 3.3 years ago by landscape95170
0
gravatar for Samuel Brady
3.3 years ago by
Samuel Brady320
Samuel Brady320 wrote:

Those GEO accessions are not necessarily TCGA samples and so may not have TCGA IDs.

ADD COMMENTlink written 3.3 years ago by Samuel Brady320
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