Question: Human in NCBI Genomes
0
gravatar for int11ap1
3.1 years ago by
int11ap1420
Barcelona
int11ap1420 wrote:

I want to download the human annotation from NCBI Genomes. Searching the term human in

https://www.ncbi.nlm.nih.gov/genome/

I redirects me into

https://www.ncbi.nlm.nih.gov/genome/?term=human

So, when I click to GFF in order to download the annotation, the downloaded file is way too small. What's going on? I found the same issue with the ftp:

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.26_GRCh38.p11/

Thank you.

human ncbi genome • 1.1k views
ADD COMMENTlink modified 3.1 years ago by vmicrobio250 • written 3.1 years ago by int11ap1420

the human genome

Fasta? GTF? Annotation? Sequence?

ADD REPLYlink written 3.1 years ago by WouterDeCoster44k

I said GFF in the post.

ADD REPLYlink written 3.1 years ago by int11ap1420
1
gravatar for vmicrobio
3.1 years ago by
vmicrobio250
vmicrobio250 wrote:

you can get the information from here : http://genome.ucsc.edu/cgi-bin/hgTables

output format : GTF

then convert it to GFF

ADD COMMENTlink written 3.1 years ago by vmicrobio250
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