coding potential tool for de novo assembled transcripts for plant species

Question

[Bioinfonext]

Is there any other tool than CPC for calculation of coding potential for de novo assembled transcripts for plant species whose genome sequences is not available.

Thanks Yogesh

Answer 1

[vmicrobio]

Hi nabiyogesh,

I would recommend COME (code source and paper).

I also heard about PLEK (code source and paper) and CPAT but never used it