Pop_Gen statistics from RNA SAM/BAM files
0
0
Entering edit mode
4.4 years ago
Phismil ▴ 20

Dear Colleagues , I prepare a BAM/SAM file from mapping the raw RNA seq reads against a Trinity-build de novo reference transcriptome . I am wondering if there is any simple pipeline/packages to estimate basic statistics such as : per site synonymous/ non- synonymous diversity, heterozygous deficiency(Fis) , number of synonymous/non synonymous segregating sites and etc . I use to use bio++ . I guess there are other ways too. Thanks in advance

rna-seq population genomics statistics • 1.1k views
ADD COMMENT
0
Entering edit mode

Try PopGenome

ADD REPLY

Login before adding your answer.

Traffic: 1797 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6