Question: KEGG Reconstruct Pathway: More Efficient Usage
0
gravatar for taylrtam
21 months ago by
taylrtam0
taylrtam0 wrote:

Hi,

I have a list of ~4000 genes and their associated KO number. Currently they're in the following format:


Gene1 K09806

Gene2 K09806

...


I'm hoping to find a program that annotates each KO with all associated pathways in the following format:


Gene1 K09806 (Pathways associated with KO)

Gene2 K09201 (Pathways associated with KO)

...

Looking into Kegg's Reconstruct Pathway program: http://www.kegg.jp/kegg/tool/map_pathway.html, the function to annotate all pathways is present. However, the output format is a messy html page. Are there any other tools available?

Thanks!

kegg genome pathway • 813 views
ADD COMMENTlink modified 21 months ago by theobroma221.1k • written 21 months ago by taylrtam0
0
gravatar for theobroma22
21 months ago by
theobroma221.1k
theobroma221.1k wrote:

Have a go at the KEGGREST package available on Bioconductor for R.

ADD COMMENTlink written 21 months ago by theobroma221.1k
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