I have a list of ~4000 genes and their associated KO number. Currently they're in the following format:
I'm hoping to find a program that annotates each KO with all associated pathways in the following format:
Gene1 K09806 (Pathways associated with KO)
Gene2 K09201 (Pathways associated with KO)
Looking into Kegg's Reconstruct Pathway program: http://www.kegg.jp/kegg/tool/map_pathway.html, the function to annotate all pathways is present. However, the output format is a messy html page. Are there any other tools available?