Question: LocusZoom and new_fugue ERROR: new_fugue did not complete successfully (for GRCh37)
0
gravatar for alioniya
21 months ago by
alioniya0
alioniya0 wrote:

I'm trying to run LocusZoom through terminal for GRCh37. Installed LocusZoom (Program + database + LD files, 2014-06-20, 1.3) and new_fugue into the same folder and run command inside the folder locuszoom/bin: ./locuszoom --cache None --metal /path/plink_result --refsnp "rs1457114" --markercol "SNP" --delim "" --pvalcol "P" --flank 400kb --pop CEU --build hg18 --source 1000G_June2010

Error: new_fugue did not complete successfully. Check logs for more information.

Could you help please how to avoid this error? Or at least where can I find logs for new_fugue?

locuszoom new_fugue • 544 views
ADD COMMENTlink modified 21 months ago • written 21 months ago by alioniya0
1

See this Locuszoom google group

ADD REPLYlink modified 21 months ago • written 21 months ago by Nandini780

Thank you! I've tried to apply recommendations from the link --no-cleanup: ./locuszoom --no-cleanup --metal /path/plink_result --refsnp "rs1457114" --markercol "SNP" --delim "" --pvalcol "P" --flank 400kb --pop CEU --build hg18 --source 1000G_June2010

But I still can't see log files, Use a more recent panel like 1000G doesn't work for me too because my data is on GRCh37.

ADD REPLYlink written 21 months ago by alioniya0

What is the error you are getting now ? The most 'recent' version of 1000G is 2014 on locuzoom so I think you will be fine.

ADD REPLYlink written 20 months ago by Nandini780
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