Labeling features in a sequence from a feature list?

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6.7 years ago

npatel89 • 0

Hello,

I'm just starting out with Biopython. I have a table of DNA sequence features which I want to use to annotate unlabelled genbank sequence files. Is there an easy way to do this, or should I just code up something custom for myself? I feel like someone must have tried this.

Thanks!

Biopython Sequence Features python • 1.0k views

ADD COMMENT • link 6.7 years ago by npatel89 • 0

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What does your table of features look like? Sequences or co-ordinates etc? You need to show us a sample of what what your input data looks like.

ADD REPLY • link 6.7 years ago by Joe 21k

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Example feature list:

Feature1 ATTAACCCTCACTAAAGGGA

Feature2 TGTAAAACGACGGCCAGT

Feature3 CAGGAAACAGCTATGACCATG

Feature4 TAATACGACTCACTATAGGG

Feature5 ATTTAGGTGACACTATAG

They are just sequences and I want to find all feature coordinates that may or may not exist in an unlabelled plasmid sequence file.

ADD REPLY • link 6.7 years ago by npatel89 • 0

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The cloning software SnapGene has this feature. I can't recall if it's available in the free version, but give it a try.

ADD REPLY • link 6.7 years ago by Joe 21k

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