Question

How to find the different expression of lncRNA

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6.7 years ago

a511512345 ▴ 190

How to find the different expression of lncRNA from Expression profiling by array?

use “limma”or other else？

R • 1.6k views

ADD COMMENT • link updated 6.7 years ago by GouthamAtla 12k • written 6.7 years ago by a511512345 ▴ 190

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Do you have the LncRNA expression levels from your expression profiling array ?

ADD REPLY • link 6.7 years ago by GouthamAtla 12k

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it is from GEO....

ADD REPLY • link 6.7 years ago by a511512345 ▴ 190

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what about ballgown? when I use ballgown, I can not add genename to the my output csv?how to solve it?

ADD REPLY • link 6.7 years ago by Bruce • 0

score 1 · Answer 1 · 2017-08-06

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6.7 years ago

GouthamAtla 12k

If you have the expression values of LncRNA of your interests across different conditions, you can apply any method that is been used for differential expression analysis. As you have already said, "Limma" would be a good choice

ADD COMMENT • link 6.7 years ago by GouthamAtla 12k

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thanks a lot。 i am a newbie

ADD REPLY • link 6.7 years ago by a511512345 ▴ 190