Question: How to find the different expression of lncRNA
0
gravatar for a511512345
10 weeks ago by
a51151234530
China guangxi nanning
a51151234530 wrote:

How to find the different expression of lncRNA from Expression profiling by array?

use “limma”or other else?

R • 275 views
ADD COMMENTlink modified 10 weeks ago by geek_y8.0k • written 10 weeks ago by a51151234530

Do you have the LncRNA expression levels from your expression profiling array ?

ADD REPLYlink written 10 weeks ago by geek_y8.0k

it is from GEO....

ADD REPLYlink written 10 weeks ago by a51151234530

what about ballgown? when I use ballgown, I can not add genename to the my output csv?how to solve it?

ADD REPLYlink written 9 weeks ago by Bruce0
1
gravatar for geek_y
10 weeks ago by
geek_y8.0k
Barcelona/London
geek_y8.0k wrote:

If you have the expression values of LncRNA of your interests across different conditions, you can apply any method that is been used for differential expression analysis. As you have already said, "Limma" would be a good choice

ADD COMMENTlink written 10 weeks ago by geek_y8.0k

thanks a lot。 i am a newbie

ADD REPLYlink written 10 weeks ago by a51151234530
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