Question: how to extract the RD, AD, VAF information for the normal and tumor samples from the MuTect2 output vcf file?
gravatar for lhaiyan3
6 months ago by
United States
lhaiyan310 wrote:

Dear all:

I have the tumor-normal pair Mutect2 output VCF file. I want to get the DP, RD, AD and VAF information for both tumor and normal samples. Can anyone please give me some suggestions? Thanks very much.



mutect2 exom-seq • 365 views
ADD COMMENTlink modified 6 months ago by Biostar ♦♦ 20 • written 6 months ago by lhaiyan310

Please post example VCF records. In the mean time, refer to bcftools or snpsift manuals to extract info and format information from VCF.

ADD REPLYlink written 6 months ago by cpad01124.1k
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