Entering edit mode
6.7 years ago
lhaiyan3
▴
80
Dear all:
I have the tumor-normal pair Mutect2 output VCF file. I want to get the DP, RD, AD and VAF information for both tumor and normal samples. Can anyone please give me some suggestions? Thanks very much.
best
HY
Please post example VCF records. In the mean time, refer to bcftools or snpsift manuals to extract info and format information from VCF.