Question: Find number of X and Y chromosomes in each sample (.csv data)
0
gravatar for alapalak
20 months ago by
alapalak0
alapalak0 wrote:

I have data that contains n number of samples. One file has the average depth of each interval for each sample. Other has chromosome start and end of the intervals present in the previous file.

How can I find number of X and Y chromosomes in each sample with this information?

depthofcoverage aneuploidy • 541 views
ADD COMMENTlink modified 20 months ago • written 20 months ago by alapalak0
1

grep the file by chromosome x and y. Please post few example lines here

ADD REPLYlink modified 20 months ago • written 20 months ago by cpad011211k

But that would give only the depth of chromosomes X and Y right?

ADD REPLYlink written 20 months ago by alapalak0
0
gravatar for alapalak
20 months ago by
alapalak0
alapalak0 wrote:

Depth

Interval Order

ADD COMMENTlink written 20 months ago by alapalak0
0
gravatar for alapalak
20 months ago by
alapalak0
alapalak0 wrote:

https://ibb.co/fiEx2F

ADD COMMENTlink written 20 months ago by alapalak0

https://ibb.co/mXF9Ga

ADD REPLYlink written 20 months ago by alapalak0
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