Question: Find number of X and Y chromosomes in each sample (.csv data)
0
gravatar for alapalak
2.6 years ago by
alapalak0
alapalak0 wrote:

I have data that contains n number of samples. One file has the average depth of each interval for each sample. Other has chromosome start and end of the intervals present in the previous file.

How can I find number of X and Y chromosomes in each sample with this information?

depthofcoverage aneuploidy • 706 views
ADD COMMENTlink modified 2.6 years ago • written 2.6 years ago by alapalak0
1

grep the file by chromosome x and y. Please post few example lines here

ADD REPLYlink modified 2.6 years ago • written 2.6 years ago by cpad011212k

But that would give only the depth of chromosomes X and Y right?

ADD REPLYlink written 2.6 years ago by alapalak0
0
gravatar for alapalak
2.6 years ago by
alapalak0
alapalak0 wrote:

Depth

Interval Order

ADD COMMENTlink written 2.6 years ago by alapalak0
0
gravatar for alapalak
2.6 years ago by
alapalak0
alapalak0 wrote:

https://ibb.co/fiEx2F

ADD COMMENTlink written 2.6 years ago by alapalak0

https://ibb.co/mXF9Ga

ADD REPLYlink written 2.6 years ago by alapalak0
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