Question

Find number of X and Y chromosomes in each sample (.csv data)

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6.7 years ago

alapalak • 0

I have data that contains n number of samples. One file has the average depth of each interval for each sample. Other has chromosome start and end of the intervals present in the previous file.

How can I find number of X and Y chromosomes in each sample with this information?

depthofcoverage aneuploidy • 1.4k views

ADD COMMENT • link 6.7 years ago by alapalak • 0

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grep the file by chromosome x and y. Please post few example lines here

ADD REPLY • link 6.7 years ago by cpad0112 21k

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But that would give only the depth of chromosomes X and Y right?

ADD REPLY • link 6.7 years ago by alapalak • 0

score 0 · Answer 1 · 2017-08-16

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6.7 years ago

alapalak • 0

Depth

Interval Order

ADD COMMENT • link 6.7 years ago by alapalak • 0

score 0 · Answer 2 · 2017-08-16

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6.7 years ago

alapalak • 0

https://ibb.co/fiEx2F

ADD COMMENT • link 6.7 years ago by alapalak • 0

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https://ibb.co/mXF9Ga

ADD REPLY • link 6.7 years ago by alapalak • 0