ggscatter two color issue

Question

[1769mkc]

data1  <- AVERAGE_HSC_LSC
data1$HSC <- as.factor(data1$HSC)
library("ggpubr")
ggscatter(data1, x = "HSC", y = "LSC", 
          color = "HSC", shape = "HSC",
          add = "reg.line", conf.int = FALSE, 
          palette = c("#00AFBB"),
          cor.coef = TRUE, cor.method = "pearson",
          color = "black", size=1)

I m getting this error, when i try to plot two color...

Error in ggscatter(data1, x = "HSC", y = "LSC", color = "HSC", shape = "HSC",  : 
  formal argument "color" matched by multiple actual arguments

Answer 1

[Chirag Parsania]

This is because you provided color twice. Can not provide same argument multiple time

[1769mkc]

can you tell me how do i just label the samples

p + gradient_color(c("red",  "blue"))

i m using this...but it seems its labelling the genes not the samples...

[Chirag Parsania]

I don't know your data format. See the example below I created from sample data. You can replicate accordingly. Provide output of head(data1) to generate for your data.

library("ggplot2")
library(ggpubr)
data <- mpg 
ggscatter(data,"cty","hwy",col="trans")