Question: GATB-minia-pipelne fails at bloocoo step
0
gravatar for Shyam
14 months ago by
Shyam120
United States
Shyam120 wrote:

Hi: I am tryin g to install GATB-minia pipeline and the make went smoothly. When I run the test it fails at the bloocoo step with error

Exception:[Errno 2] No such file or directory

Evrything is as is with the git directory. I didn't change anything. /test folder is intact.
Can anyone help with this.
Thank you
G

gatb • 450 views
ADD COMMENTlink modified 11 months ago by RamRS18k • written 14 months ago by Shyam120

Its working now. I replaced the default bloocoo executable with the one I compile from the source and it is working now. Did the same for the minia too.

ADD REPLYlink written 14 months ago by Shyam120
0
gravatar for Rayan Chikhi
11 months ago by
Rayan Chikhi1.4k
France, Lille, CNRS
Rayan Chikhi1.4k wrote:

Glad you were able to solve it. Note also that it is possible to run gatb-minia-pipeline without bloocoo, using the --no-error-correction flag. If you have any other issues, please let us know.

ADD COMMENTlink modified 11 months ago by RamRS18k • written 11 months ago by Rayan Chikhi1.4k
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