Question: GATB-minia-pipelne fails at bloocoo step
0
gravatar for Shyam
3 months ago by
Shyam100
United States
Shyam100 wrote:

Hi: I am tryin g to install GATB-minia pipeline and the make went smoothly. When I run the test it fails at the bloocoo step with error

Exception:[Errno 2] No such file or directory

Evrything is as is with the git directory. I didn't change anything. /test folder is intact.
Can anyone help with this.
Thank you
G

gatb • 226 views
ADD COMMENTlink modified 5 weeks ago by Ram12k • written 3 months ago by Shyam100

Its working now. I replaced the default bloocoo executable with the one I compile from the source and it is working now. Did the same for the minia too.

ADD REPLYlink written 3 months ago by Shyam100
0
gravatar for Rayan Chikhi
5 weeks ago by
Rayan Chikhi1.2k
France, Lille, CNRS
Rayan Chikhi1.2k wrote:

Glad you were able to solve it. Note also that it is possible to run gatb-minia-pipeline without bloocoo, using the --no-error-correction flag. If you have any other issues, please let us know.

ADD COMMENTlink modified 5 weeks ago by Ram12k • written 5 weeks ago by Rayan Chikhi1.2k
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