Question: get mRNAs by TxDb
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gravatar for hasani.iut6
24 months ago by
hasani.iut640
Iran, Islamic Republic Of
hasani.iut640 wrote:

Hi everyone.

I'm using transcripts() function in R environment to obtain transcript of Human from TxDb.Hsapiens.UCSC.hg38.knownGene package. I don't know that this transcripts contain intron or not. On the other word, are these transcripts mRNA or not?

tnx all,

Mansoor.

mrna • 679 views
ADD COMMENTlink modified 24 months ago by benformatics1.1k • written 24 months ago by hasani.iut640
1
gravatar for benformatics
24 months ago by
benformatics1.1k
ETH Zurich
benformatics1.1k wrote:

The transcripts() function will return coordinates for the entire range of a given transcript including introns. To get only the exonic regions use exonsBy()

## known exons for each transcript
exonsBy(TxDb.Hsapiens.UCSC.hg38.knownGene,'tx')

## known exons for each gene
exonsBy(TxDb.Hsapiens.UCSC.hg38.knownGene,'gene')
ADD COMMENTlink modified 24 months ago • written 24 months ago by benformatics1.1k
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