Question: get mRNAs by TxDb
0
gravatar for hasani.iut6
3.1 years ago by
hasani.iut640
Iran, Islamic Republic Of
hasani.iut640 wrote:

Hi everyone.

I'm using transcripts() function in R environment to obtain transcript of Human from TxDb.Hsapiens.UCSC.hg38.knownGene package. I don't know that this transcripts contain intron or not. On the other word, are these transcripts mRNA or not?

tnx all,

Mansoor.

mrna • 958 views
ADD COMMENTlink modified 3.1 years ago by benformatics2.0k • written 3.1 years ago by hasani.iut640
1
gravatar for benformatics
3.1 years ago by
benformatics2.0k
ETH Zurich
benformatics2.0k wrote:

The transcripts() function will return coordinates for the entire range of a given transcript including introns. To get only the exonic regions use exonsBy()

## known exons for each transcript
exonsBy(TxDb.Hsapiens.UCSC.hg38.knownGene,'tx')

## known exons for each gene
exonsBy(TxDb.Hsapiens.UCSC.hg38.knownGene,'gene')
ADD COMMENTlink modified 3.1 years ago • written 3.1 years ago by benformatics2.0k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1548 users visited in the last hour