Question: How to find expression data-set derive from RNA-Seq experiments
0
gravatar for lmanohara99
18 months ago by
lmanohara9920
Sri Lanka
lmanohara9920 wrote:

Where can I find open access expression data-sets derive from RNA-Seq experiments?

sequencing rna-seq • 594 views
ADD COMMENTlink modified 18 months ago by Jake Warner680 • written 18 months ago by lmanohara9920

This is very broad, what do you need exactly? expression data set could mean a lot of things:

  • assembled transcripts
  • gene or transcript counts
  • alternative splicing data
  • normalized data ...
ADD REPLYlink modified 18 months ago • written 18 months ago by Michael Dondrup45k

Specially I am searching expressions such as disease or nondisease, mutation or non-mutation.

ADD REPLYlink written 18 months ago by lmanohara9920

Hi Michael, Can you help me to find a data-set?

ADD REPLYlink modified 18 months ago • written 18 months ago by lmanohara9920

What do you want to do with the data, I am guessing you want to learn how to run some pipelines/tools on them, and the data need to be from which species?

ADD REPLYlink written 18 months ago by Michael Dondrup45k

Yeah, that will be my next step. First I need to understand the data structure and what parameters are included. I am searching data set related to homo-sapience.

ADD REPLYlink written 18 months ago by lmanohara9920
1
gravatar for Jake Warner
18 months ago by
Jake Warner680
Jake Warner680 wrote:
  1. NCBI Short Read Archive : Raw sequencing reads from many, many, projects.

  2. The Cancer Genome Stlas : Cancer transcriptomic data.

  3. Recount : Count tables from human studies.

  4. Most publications make their data available.

ADD COMMENTlink written 18 months ago by Jake Warner680

Thank you for the information.

ADD REPLYlink written 18 months ago by lmanohara9920
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1499 users visited in the last hour