Question: How to find expression data-set derive from RNA-Seq experiments
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gravatar for lmanohara99
2.1 years ago by
lmanohara9920
Sri Lanka
lmanohara9920 wrote:

Where can I find open access expression data-sets derive from RNA-Seq experiments?

sequencing rna-seq • 706 views
ADD COMMENTlink modified 2.1 years ago by Jake Warner750 • written 2.1 years ago by lmanohara9920

This is very broad, what do you need exactly? expression data set could mean a lot of things:

  • assembled transcripts
  • gene or transcript counts
  • alternative splicing data
  • normalized data ...
ADD REPLYlink modified 2.1 years ago • written 2.1 years ago by Michael Dondrup46k

Specially I am searching expressions such as disease or nondisease, mutation or non-mutation.

ADD REPLYlink written 2.1 years ago by lmanohara9920

Hi Michael, Can you help me to find a data-set?

ADD REPLYlink modified 2.1 years ago • written 2.1 years ago by lmanohara9920

What do you want to do with the data, I am guessing you want to learn how to run some pipelines/tools on them, and the data need to be from which species?

ADD REPLYlink written 2.1 years ago by Michael Dondrup46k

Yeah, that will be my next step. First I need to understand the data structure and what parameters are included. I am searching data set related to homo-sapience.

ADD REPLYlink written 2.1 years ago by lmanohara9920
1
gravatar for Jake Warner
2.1 years ago by
Jake Warner750
Jake Warner750 wrote:
  1. NCBI Short Read Archive : Raw sequencing reads from many, many, projects.

  2. The Cancer Genome Stlas : Cancer transcriptomic data.

  3. Recount : Count tables from human studies.

  4. Most publications make their data available.

ADD COMMENTlink written 2.1 years ago by Jake Warner750

Thank you for the information.

ADD REPLYlink written 2.1 years ago by lmanohara9920
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