Question: (Closed) how to remove redundant sequences from assembled transcripts
0
gravatar for majeedaasim
2.8 years ago by
majeedaasim40
United States
majeedaasim40 wrote:

I have assembled the raw reads successfully. Now I want to remove any redundant transcripts from my assembly if there is any. Which too is best suited for it.

Thanks

rna-seq • 1.3k views
ADD COMMENTlink modified 2.8 years ago by urjaswita90 • written 2.8 years ago by majeedaasim40

Is your question answered by this: How to cluster transcripts assembled using TRINITY into unigene after blast?

ADD REPLYlink written 2.8 years ago by Michael Dondrup47k

Hello majeedaasim!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

ADD REPLYlink written 2.8 years ago by Michael Dondrup47k
0
gravatar for urjaswita
2.8 years ago by
urjaswita90
United States
urjaswita90 wrote:

The program will depend on your downstream application but you can use CD-HIT EST to remove redundant sequences at a given sequence identity. It also gives you the longest sequence in the cluster. There are other similar clustering programs too.

ADD COMMENTlink written 2.8 years ago by urjaswita90
Please log in to add an answer.
The thread is closed. No new answers may be added.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1601 users visited in the last hour