I'm looking at a DELLY annotated file,
I am having some difficulty visualizing the difference between PairEndReadSupport, SplitReadSupport, TumorVariantCount, TumorSplitVariantCount, TumorReadCount.
Can someone familiar with DELLY output explain the differences between these? I assume that Paired End Support are basically how many total paired end reads support that structural variant. And I thought Split Read Support was how many split reads support a structural variant. But I thought that was supposed to be the Tumor Split Variant Count, and I don't how this relates to Tumor Variant Count.