Closed:How to transfer annotation from HG19 to genome sequence.

Question

[clear.choi]

If I have example genome sequence (3GB) around 4000 contig. And maximum contig length is 15Mbp.

Also, I have bed file for HG19.

Could someone know how to transfer HG19 annotation (from bed file) to a genome sequence? (Also recommend alignment tools)

For example, I have HG19 KIR region annotation, If I aligned HG19 to genome sequence, I can see where is located KIR region in the genome sequence from HG19 annotation. And I believe there is some way I can copy this annotation to genome sequence and this genome sequence can be a reference. For instance, I know where KIR region is located in the genome sequence, I can easily extract sequence from annotation bed file.

Thank you,