I have downloaded and installed all the dependencies for excavator2 tool, I have created the target, and while creating data prepare step I ran the following command
perl EXCAVATORDataPrepare.pl melas_prepare.txt --processors 6 --target melas20k --assembly hg19
I got the following error:
Working on sample M1. Creating Read Count Data... Removing temporary files... Read Count done! Normalizing Read Count Data... Loading required package: lattice Loading required package: survival Loading required package: Formula Loading required package: ggplot2 Attaching package: ‘Hmisc’ The following objects are masked from ‘package:base’: format.pval, round.POSIXt, trunc.POSIXt, units Error in quantile.default(RCTL[ind], c(0.1, 0.9)) : missing values and NaN's not allowed if 'na.rm' is FALSE Calls: QuantileLength -> rbind -> quantile -> quantile.default Execution halted
How to resolve the issuel?