Question: Linkage disequilibrium after HapMap
0
gravatar for Kizuna
2.8 years ago by
Kizuna800
France, Paris
Kizuna800 wrote:

Dear All,

After shutting down HapMap, I am finding some difficulties to assess the L.D between SNPs.. any suggestion about an alternative browser is welcomed ..

Thx

snp linkage • 704 views
ADD COMMENTlink modified 12 months ago by Maki0 • written 2.8 years ago by Kizuna800

Hi Kizuna, what do you mean by 'shutting down HapMap'? Also, to which 'browser' are you referring?

Kevin

ADD REPLYlink written 2.8 years ago by Kevin Blighe61k
0
gravatar for Pramod
12 months ago by
Pramod0
IIT Indore
Pramod0 wrote:

The automatic choice is Plink.

ADD COMMENTlink written 12 months ago by Pramod0
0
gravatar for Maki
12 months ago by
Maki0
Philadelphia, PA
Maki0 wrote:

For simple lookups, see here (based on 1000 Genomes)

https://ldlink.nci.nih.gov/?tab=ldmatrix

ADD COMMENTlink written 12 months ago by Maki0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1989 users visited in the last hour