Question: Linkage disequilibrium after HapMap
0
gravatar for Kizuna
3.1 years ago by
Kizuna820
France, Paris
Kizuna820 wrote:

Dear All,

After shutting down HapMap, I am finding some difficulties to assess the L.D between SNPs.. any suggestion about an alternative browser is welcomed ..

Thx

snp linkage • 749 views
ADD COMMENTlink modified 16 months ago by Maki0 • written 3.1 years ago by Kizuna820

Hi Kizuna, what do you mean by 'shutting down HapMap'? Also, to which 'browser' are you referring?

Kevin

ADD REPLYlink written 3.1 years ago by Kevin Blighe66k
0
gravatar for Pramod Shinde
16 months ago by
La Jolla Institute for Immunology
Pramod Shinde0 wrote:

The automatic choice is Plink.

ADD COMMENTlink written 16 months ago by Pramod Shinde0
0
gravatar for Maki
16 months ago by
Maki0
Philadelphia, PA
Maki0 wrote:

For simple lookups, see here (based on 1000 Genomes)

https://ldlink.nci.nih.gov/?tab=ldmatrix

ADD COMMENTlink written 16 months ago by Maki0
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