Question: pathway mapping of annotated genes (of bacteria)
gravatar for bird77
2.5 years ago by
bird7750 wrote:

I want to do metabolic mapping of annotated bacterial genomes. I annotated my genomes with prokka (which delivers annotation and in such cases gene name and EC number) and I would like to know if there are modules/packages for Python/R that can do this kind of mapping.

So what I would like to know is what pathways are covered by available genes and to what extend. It is also of interest for me which genes cannot be mapped.

Any ideas?

Thank you.

genome • 990 views
ADD COMMENTlink modified 2.5 years ago by Biostar ♦♦ 20 • written 2.5 years ago by bird7750

One suggestion on this tutorial.

ADD REPLYlink written 2.5 years ago by h.mon29k
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