Question: sleuth differential expression without bootstrap
gravatar for Pappu
3.1 years ago by
Pappu1.9k wrote:

I was trying to run sleuth for differential expression analysis. But I don't have the kallisto bootstrap values. I am wondering if it can run without bootstrap estimates.

rna-seq • 1.4k views
ADD COMMENTlink written 3.1 years ago by Pappu1.9k

If you have no bootstraps I'm pretty sure you can't prep the quantification for Sleuth. I had this issue when trying to run Salmon converted estimates (no bootstraps) in Sleuth and it threw an error.

ADD REPLYlink written 3.1 years ago by andrew.j.skelton736.0k
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