Question: Different binding pockets from softwares
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gravatar for Janeeta Raja
17 months ago by
Pakistan
Janeeta Raja 20 wrote:

I used two sotwares Autodock Vina and Patchdock for blind docking. Both gives different binding pockets and interacting residues for same ligand and receptor. Even on repeating the result is same. Which software result should I consider to be accurate?

ADD COMMENTlink modified 17 months ago • written 17 months ago by Janeeta Raja 20
0
gravatar for Bioaln
17 months ago by
Bioaln300
France
Bioaln300 wrote:

Autodock is severely outdated, use the most recent one.

ADD COMMENTlink written 17 months ago by Bioaln300
0
gravatar for Janeeta Raja
17 months ago by
Pakistan
Janeeta Raja 20 wrote:

New versions are not freely available.

ADD COMMENTlink written 17 months ago by Janeeta Raja 20

Not the AutoDock, a different docking software.

ADD REPLYlink written 17 months ago by Bioaln300
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