Question: Different binding pockets from softwares
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gravatar for Janeeta Raja
21 months ago by
Pakistan
Janeeta Raja 20 wrote:

I used two sotwares Autodock Vina and Patchdock for blind docking. Both gives different binding pockets and interacting residues for same ligand and receptor. Even on repeating the result is same. Which software result should I consider to be accurate?

ADD COMMENTlink modified 21 months ago • written 21 months ago by Janeeta Raja 20
0
gravatar for Bioaln
21 months ago by
Bioaln310
France
Bioaln310 wrote:

Autodock is severely outdated, use the most recent one.

ADD COMMENTlink written 21 months ago by Bioaln310
0
gravatar for Janeeta Raja
21 months ago by
Pakistan
Janeeta Raja 20 wrote:

New versions are not freely available.

ADD COMMENTlink written 21 months ago by Janeeta Raja 20

Not the AutoDock, a different docking software.

ADD REPLYlink written 21 months ago by Bioaln310
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