Question: How to extend the heatmap data points that extended past end of ideogram in circos plot?
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gravatar for User000
9 months ago by
User000250
User000250 wrote:

Hello,

Does anybody know if there is a way to extend heatmap or histogram or tile data points that are a bit outside the ideogram? Trimming is not the best solution as there seems that some data is missing...

circos • 272 views
ADD COMMENTlink written 9 months ago by User000250

You might have to give a bit more details about your code, package used, example, ... This is not enough to allow us to help you.

ADD REPLYlink written 9 months ago by VHahaut1.1k

I have an karyotype file with for example, chr1 0-20. In my 1st heatmap my chr size is 0-40 and 2nd is from 0-20, I want to use connectors to connect the genes, but since my 1st genome has longer chr size, it gets trimmed and data on the second heatmap is missing....

ADD REPLYlink written 9 months ago by User000250

Warning* Data point of type [highlight] [0-197195432] extended past end of ideogram [mm1 0-195471971]. This data point will be [trimmed].

I do not want these to be trimmed, but to be extended...I dont really know if this is possible at al

ADD REPLYlink written 9 months ago by User000250
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