I have a list of peaks that I want to map into genome and get different genomic features. I would like to see whether the peaks are mapped into:
5'CAP --> 5'UTR --> CDS --> STOP CODON --> 3'UTR
Are there any programs or ways to do this?
I have already looked at ChIPpeakAnno and ChIPseeker (both in Bioconductor). Both programs map peaks into
Promoter, 5'UTR, 3'UTR, Exons, immediateDownstream and Introns.
Many thanks, Ezhil