Question: Where can find ncRNA sequences data separately
0
gravatar for Janey
24 months ago by
Janey30
USA
Janey30 wrote:

Hi From which site I can download non-coding RNA sequences separately (such as tRNA and rRNA) in a FASTA format?

Thanks

rna-seq • 545 views
ADD COMMENTlink written 24 months ago by Janey30

Obviously NCBI but you might find them hard to find if you don't know exactly what you are looking for. You might try UCSC genome browser (table browser actually) and RFAM.

ADD REPLYlink written 24 months ago by Asaf6.3k

Rfam is good but how can I get these data separately from Rfam for local blast?

ADD REPLYlink written 24 months ago by Janey30

You can find the Rfam family you're interested in and get all the sequences from ftp://ftp.ebi.ac.uk/pub/databases/Rfam/13.0/fasta_files/

ADD REPLYlink written 24 months ago by Asaf6.3k

Thank you very much Asaf

ADD REPLYlink written 24 months ago by Janey30
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1895 users visited in the last hour