This is probably incredibly basic, but I'm at a loss. I am trying to install ShotgunFunctionalizeR but I keep getting warning messages. I am following the requirements and installation directions on their website.
> source("http://bioconductor.org/biocLite.R") Bioconductor version 3.5 (BiocInstaller 1.26.1), ?biocLite for help > biocLite() BioC_mirror: https://bioconductor.org Using Bioconductor 3.5 (BiocInstaller 1.26.1), R 3.4.2 (2017-09-28). > install.packages("ShotgunFunctionalizeR", contriburl="http://shotgun.zool.gu.se") # Seems to install with no warnings or error messages. > library("ShotgunFunctionalizeR") Error in library("ShotgunFunctionalizeR") : there is no package called ‘ShotgunFunctionalizeR’
For some reason it's not actually being installed. I can't find it in my list of packages or call functions from it. I've also tried installation via biocLite(), but that also doesn't seem to work. Again, it seems to install, but the package doesn't appear anywhere.
> biocLite("ShotgunFunctionalizeR") BioC_mirror: https://bioconductor.org Using Bioconductor 3.5 (BiocInstaller 1.26.1), R 3.4.2 (2017-09-28). Installing package(s) ‘ShotgunFunctionalizeR’ Warning message: package ‘ShotgunFunctionalizeR’ is not available (for R version 3.4.2)
Does this have something to do with the version of R I'm using (v 3.4.2)? According to the ShotgunFunctionalizeR documentation it requires any version of R >= 1.8.0.
Since ShotgunFunctionalizeR is dependent on the Bioconductor multtest package, I also tried installing that first before installing ShotgunFunctionalizeR. I get the same results.
Any help would be much appreciated.