Getting Smalt to work with bambamc
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6.5 years ago

I have smalt and bambamc installed. Smalt requires bambamc to be able to work with BAM files. Smalt is returning the error:

smalt: error while loading shared libraries: libbambamc.so.0: cannot open shared object file: No such file or directory

I check the bambamc installtion instructions and it tells me where it installs these libraries by default, but I check their locations and they are not there, any ideas?

smalt bambamc software error alignment sequence • 1.4k views
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try to find the lib ? : find / -type f -name "libbambamc.so.*" 2> /dev/null and then set the LD_LIBRARY_PATH https://stackoverflow.com/questions/7148036/

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